PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P13980_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 368aa    MW: 40029.6 Da    PI: 8.0732
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P13980_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.85.7e-3653140275
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..ea 75 
                            +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++            + +++s+c   +
  GSMUA_Achr7P13980_001  53 TGRKDRHSKVCTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKAAIDKLAELppwtpsaskltaPHTASSSCrpPP 140
                            79**************************************************************885555554444222223333211 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.5E-3253133IPR005333Transcription factor, TCP
PROSITE profilePS5136933.24255113IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGKGHSHHGL GYNQLSLHHH QQRPQNRSLN DWVRGGSVGE IVEVHAGHIV RSTGRKDRHS  60
KVCTAKGLRD RRVRLSAHTA IQFYDVQDRL GYDRPSKAVD WLIKNAKAAI DKLAELPPWT  120
PSASKLTAPH TASSSCRPPP SDQFPSTEQN MTEFSEEPFA VGAPLLDSET LADVIKFFCP  180
MVASATTAPF ATPSIRLDSY LSDLPSRTSS QAQDLRLSLQ SFQDPVFHTL ESGHQHHHHA  240
QCLRSPNAAT SDAHFLSSAN LAFNAASVST EAFGSAVPLH SVLGQSQLFF QRGPLQSGNS  300
PVVHAREDTV DAGADHRVQT KVHPCTSPIG FTSVASFSGF HIPARIQGEE KHDSITDKPP  360
SASSAPRH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409694.10.0PREDICTED: transcription factor PCF5-like
TrEMBLM0THD50.0M0THD5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P13980_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.14e-71TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3